Analysis of the gut microbiome of patients with rare monogenic metabolic diseases

Organizational Data

DRKS-ID:
DRKS00033718
Recruitment Status:
Recruiting ongoing
Date of registration in DRKS:
2024-02-26
Last update in DRKS:
2024-04-15
Registration type:
Prospective

Acronym/abbreviation of the study

MicroMeDi

URL of the study

No Entry

Brief summary in lay language

The human microbiome is defined as the sum of all microorganisms (bacteria, fungi and phages) living in the body or on its surface. Many of these organisms are associated with aspects of health and disease. The gut flora plays a central role in the development of the immune system and the metabolism. In some diseases, e.g. Alzheimer's, it has been shown that the gut flora has an influence on the course of the disease. The communication pathway between the gut flora and the brain is referred to as the "gut-brain axis". The communication arises from the fact that bacteria can also influence processes in the brain via the release or degradation of certain signal substances. It is assumed that one can influence the composition of the gut flora via the daily diet and thus one can also influence the communication via the gut-brain axis and influence some symptoms of a disease. In this study we want to learn more about the microbiome in the gut, skin and saliva of patients with rare monogenic metabolic diseases and compare it with the microbiome of carriers and healthy controls. We want to investigate whether there are differences in the amount and type of microorganisms and metabolites in patients with rare monogenic metabolic diseases compared to carriers and healthy controls. In addition, we want to find starting points for future treatments.

Brief summary in scientific language

Rare monogenetic metabolic diseases are caused by variants in genes encoding proteins involved in metabolic pathways. In general, these defects lead to (1) an accumulation of toxic metabolites as metabolic side reactions are utilized instead, and (2) reduced or absent production of the metabolite, leading to metabolic dead ends. In neurotransmitter defects, patients suffer from neurological phenotypes such as early-onset developmental delay, cognitive deficits, autonomic dysfunction and movement disorders, whereas patients with urea cycle defects show cognitive deterioration due to the accumulation of neurotoxic NH4+ in metabolic decompensation. The human microbiome is defined as the sum of all microorganisms (including bacteria, fungi and viruses) that live inside the body or on its surface. Neurodevelopment is closely linked to the gut microbiome. Accumulating studies point to a complex interplay between the microbiome and aspects of neurodegeneration, as seen in Parkinson's disease, Alzheimer's disease, multiple sclerosis and amyotrophic lateral sclerosis. An apparent communication pathway between the gut microbiome and the brain, the so-called "gut-brain axis", is based on the idea that bacteria can produce or consume neurotransmitters such as dopamine, serotonin or GABA. However, research has mainly focused on the microbiome of animals, such as rodents. In recent years, an increasing number of studies have been conducted on the human microbiome. Here, intervention-based approaches using prebiotics, probiotics, fecal transplantation and antibiotics have been used to identify key components of the microbiome that influence neurodevelopment. While this evidence suggests a clear influence of the microbiome on the development and function of the central nervous system, further research is needed. The aim of this study is to characterize the microbiome of patients with rare monogenetic metabolic diseases in order to lay the foundation for the development of future treatment options such as transfection, dietary changes and probiotic approaches to alleviate symptoms.

Health condition or problem studied

Free text:
Rare monogenic metabolic diseases
Healthy volunteers:
Yes

Interventions, Observational Groups

Arm 1:
Saliva swabs, skin surface swabs and stool samples will be done . There are no extra visits required for this study. Sampling of saliva and skin surface swabs will be included into the regular visits. If participants/ their representatives prefer, the sample collection can be done at home and shipped to Heidelberg. Two timepoints for sampling are planned per patient. Since the collection of the samples for laboratory analysis has no influence on the course of the disease and the treatment of the participants, no follow-up observation is planned. In addition to the patients, up to 30 healthy and 30 heterozygous carriers per disease will be included in the study as controls.

Endpoints

Primary outcome:
Investigate the taxonomic differences in the microbiome of a group of patients with a given monogenic metabolic disease, heterozygous carriers and region and age matched healthy controls.
Secondary outcome:
1) Investigate qualitative differences of microbial genomes and genes in the salvia, skin and gut microbiome of patients with a given monogenic metabolic disease, heterozygous variant carriers and healthy controls. 2) Investigate differences in relative abundances of microbial genomes and genes in the salvia, skin and gut microbiome of patients with a given monogenic metabolic disease, variant carriers and healthy controls. 3) Identify targets for future treatment options.

Study Design

Purpose:
Basic research/physiological study
Retrospective/prospective:
Prospective
Study type:
Non-interventional
Longitudinal/cross-sectional:
Cross-sectional study
Study type non-interventional:
Epidemiological study

Recruitment

Recruitment Status:
Recruiting ongoing
Reason if recruiting stopped or withdrawn:
No Entry

Recruitment Locations

Recruitment countries:
  • Germany
Number of study centers:
Monocenter study
Recruitment location(s):
  • University medical center Zentrum für Kinder- und Jugendmedizin Heidelberg

Recruitment period and number of participants

Planned study start date:
2024-03-15
Actual study start date:
2024-04-03
Planned study completion date:
2029-12-31
Actual Study Completion Date:
No Entry
Target Sample Size:
500
Final Sample Size:
No Entry

Inclusion Criteria

Sex:
All
Minimum Age:
3 Years
Maximum Age:
no maximum age
Additional Inclusion Criteria:
Children and adults - with confirmed diagnosis of a rare monogenic metabolic disease - who are heterozygous carriers of variants in a gene leading to a rare metabolic disease - who do not carry variants in a gene responsible for a rare monogenic metabolic disease. These serve as healthy controls (age and region matched to the patients)

Exclusion Criteria

- Active or recent illegal substance or alcohol abuse or dependence within the past year. - History of other significant medical disorders apart from rare monogenic metabolic disease (e.g. leukaemia, diabetes mellitus, renal failure…) - Use of antibiotics or probiotics within six months prior to sampling - Individuals having had digestive surgery, are on restrictive diets, or are pregnant

Addresses

Primary Sponsor

Address:
Universitätsklinikum Heidelberg
Katrin Erk
Im Neuenheimer Feld 672
69120 Heidelberg
Germany
Telephone:
+496221 56-7000
Fax:
+496221 56-4888
Contact per E-Mail:
Contact per E-Mail
URL:
https://www.klinikum.uni-heidelberg.de/organisation/unternehmen/vorstand/detailseite-ke
Investigator Sponsored/Initiated Trial (IST/IIT):
Yes

Contact for Scientific Queries

Address:
Zentrum für Kinder- und Jugendmedizin
Dr. Sabine Jung-Klawitter
Im Neuenheimer Feld 669
69120 Heidelberg
Germany
Telephone:
+496221 564002
Fax:
No Entry
Contact per E-Mail:
Contact per E-Mail
URL:
No Entry

Contact for Public Queries

Address:
Zentrum für Kinder- und Jugendmedizin
Dr. Sabine Jung-Klawitter
Im Neuenheimer Feld 669
69120 Heidelberg
Germany
Telephone:
+496221 564002
Fax:
No Entry
Contact per E-Mail:
Contact per E-Mail
URL:
No Entry

Principal Investigator

Address:
Zentrum für Kinder- und Jugendmedizin
Dr. Sabine Jung-Klawitter
Im Neuenheimer Feld 669
69120 Heidelberg
Germany
Telephone:
+496221 564002
Fax:
No Entry
Contact per E-Mail:
Contact per E-Mail
URL:
No Entry

Sources of Monetary or Material Support

Public funding institutions financed by tax money/Government funding body (German Research Foundation (DFG), Federal Ministry of Education and Research (BMBF), etc.)

Address:
Deutsche Forschungsgemeinschaft e.V.
Kennedyallee 40
53175 Bonn
Germany
Telephone:
+49 (228) 885-1
Fax:
+49 (228) 885-2777
Contact per E-Mail:
Contact per E-Mail
URL:
http://www.dfg.de

Ethics Committee

Address Ethics Committee

Address:
Ethikkommission der Medizinischen Fakultät Heidelberg
Alte Glockengießerei 11/1
69115 Heidelberg
Germany
Telephone:
+49-6221-5626460
Fax:
No Entry
Contact per E-Mail:
Contact per E-Mail
URL:
http://www.medizinische-fakultaet-hd.uni-heidelberg.de/einrichtungen/zentrale-einrichtungen/ethikkommission

Vote of leading Ethics Committee

Vote of leading Ethics Committee
Date of ethics committee application:
2023-05-08
Ethics committee number:
S-278/2023
Vote of the Ethics Committee:
Approved
Date of the vote:
2023-07-13

Further identification numbers

Other primary registry ID:
No Entry
EudraCT Number:
No Entry
UTN (Universal Trial Number):
No Entry
EUDAMED Number:
No Entry

IPD - Individual Participant Data

Do you plan to make participant-related data (IPD) available to other researchers in an anonymized form?:
No
IPD Sharing Plan:
No Entry

Study protocol and other study documents

Study protocols:
No Entry
Study abstract:
No Entry
Other study documents:
No Entry
Background literature:
No Entry
Related DRKS studies:
No Entry

Publication of study results

Planned publication:
No Entry
Publikationen/Studienergebnisse:
No Entry
Date of first publication of study results:
No Entry
DRKS entry published for the first time with results:
No Entry

Basic reporting

Basic Reporting / Results tables:
No Entry
Brief summary of results:
No Entry